Publications

Recent Publications by members of the group

• Complete list

Theses

• Genome Jigsaw: Implications of 16S Ribosomal RNA Gene Fragment Position for Bacterial Species Identification. M.Sc. Thesis by Jennifer Mitchell (2014).
• Zombies in Bacterial Genomes: Identification and Analysis of Previously Virulent Phage. M.Sc. Thesis by Scott Mitchell (2014).
• The evolutionary dynamics of transcription factors, operators, and their target genes across prokaryotes. Master’s thesis by Marc del Grande (2013).
• Evolutionary Relationship of the Bacterial Cellulose Synthesis Gene Cluster among Prokaryotes. Undergrad thesis by Elisabeth Kell (2013).
• Testing the Speed of USEARCH and BLAT in Comparison to BLAST and Determining their Sensitivity for Detecting Orthologs as Reciprocal Best Hits. Undergrad thesis by Natalie Ward (2012).
• Insights into Genome Functional Organisation through the Analysis of Interaction Networks. Master’s thesis by Andre Masella (2010).
• Inference, Orthology, and Inundation: Addressing Current Challenges in the Field of Metagenomics. Master’s thesis by Greg Vey (2009).
• Computational Prediction of Functionally Associated Genes in Model Eucarya, with a Focus on Saccharomyces cerevisiae Undergrad thesis by Meghan Martin (2007).
• Improving the Detection of Orthologs by Altering and Comparing Various Methods in Bioinformatics Undergrad thesis by Kristen Latimer (2007).