E. coli K12 Reciprocal Best Hits

Differences in number of genes finding orthologs / homologs with different BLASTP options. See: Orthologs.

  1. Genome clusters. Genomes clustered by similarity for comparative genomics.
  2. Transcription unit predictions. Predictions of transcription units by intergenic distances
  3. Orthologs. BLASTP options and orthologs detected as Reciprocal Best Hits
  4. Operons Estimates. Estimates of proportion of prokaryotic operons based on genome structure
  5. Phylogenetic Profiles. Redundant genomes, phylogenetic profiles and gold standards valid in most, if not all, Prokaryotes
  6. gisql. Genetic interactome set query language for manipulation of gene interaction graphs

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